rsbRA protein (Clostridium saccharobutylicum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

rsbRA

RsbT co-antagonist protein RsbRA. (286 aa)

Predicted Functional Partners:

rsbT_2

0.999

rsbT_1

0.992

rsbS

0.979

AQS00084.1

0.890

barA_2

0.883

barA_1

0.867

fliN

0.855

spoIIAB_1

0.820

spoIIAB_2

0.819

fliG

0.817

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS00084.1	barA_1	CSACC_19000	CSACC_21950	Putative histidine kinase sensor domain protein.	Signal transduction histidine-protein kinase BarA.	0.985
AQS00084.1	barA_2	CSACC_19000	CSACC_22060	Putative histidine kinase sensor domain protein.	Signal transduction histidine-protein kinase BarA.	0.969
AQS00084.1	fliG	CSACC_19000	CSACC_39120	Putative histidine kinase sensor domain protein.	Flagellar motor switch protein FliG.	0.940
AQS00084.1	fliN	CSACC_19000	CSACC_39520	Putative histidine kinase sensor domain protein.	Flagellar motor switch protein FliN.	0.967
AQS00084.1	rsbRA	CSACC_19000	CSACC_20440	Putative histidine kinase sensor domain protein.	RsbT co-antagonist protein RsbRA.	0.890
AQS00084.1	rsbS	CSACC_19000	CSACC_20450	Putative histidine kinase sensor domain protein.	RsbT antagonist protein RsbS.	0.890
AQS00084.1	rsbT_1	CSACC_19000	CSACC_20460	Putative histidine kinase sensor domain protein.	Serine/threonine-protein kinase RsbT.	0.883
AQS00084.1	rsbT_2	CSACC_19000	CSACC_20470	Putative histidine kinase sensor domain protein.	Serine/threonine-protein kinase RsbT.	0.995
AQS00084.1	spoIIAB_1	CSACC_19000	CSACC_10600	Putative histidine kinase sensor domain protein.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.883
AQS00084.1	spoIIAB_2	CSACC_19000	CSACC_20760	Putative histidine kinase sensor domain protein.	Anti-sigma F factor.	0.883
barA_1	AQS00084.1	CSACC_21950	CSACC_19000	Signal transduction histidine-protein kinase BarA.	Putative histidine kinase sensor domain protein.	0.985
barA_1	barA_2	CSACC_21950	CSACC_22060	Signal transduction histidine-protein kinase BarA.	Signal transduction histidine-protein kinase BarA.	0.988
barA_1	fliG	CSACC_21950	CSACC_39120	Signal transduction histidine-protein kinase BarA.	Flagellar motor switch protein FliG.	0.965
barA_1	fliN	CSACC_21950	CSACC_39520	Signal transduction histidine-protein kinase BarA.	Flagellar motor switch protein FliN.	0.994
barA_1	rsbRA	CSACC_21950	CSACC_20440	Signal transduction histidine-protein kinase BarA.	RsbT co-antagonist protein RsbRA.	0.867
barA_1	rsbS	CSACC_21950	CSACC_20450	Signal transduction histidine-protein kinase BarA.	RsbT antagonist protein RsbS.	0.857
barA_1	rsbT_1	CSACC_21950	CSACC_20460	Signal transduction histidine-protein kinase BarA.	Serine/threonine-protein kinase RsbT.	0.841
barA_1	rsbT_2	CSACC_21950	CSACC_20470	Signal transduction histidine-protein kinase BarA.	Serine/threonine-protein kinase RsbT.	0.960
barA_1	spoIIAB_1	CSACC_21950	CSACC_10600	Signal transduction histidine-protein kinase BarA.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.757
barA_1	spoIIAB_2	CSACC_21950	CSACC_20760	Signal transduction histidine-protein kinase BarA.	Anti-sigma F factor.	0.757