rsbT_1 protein (Clostridium saccharobutylicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rsbT_1

Serine/threonine-protein kinase RsbT. (131 aa)

Predicted Functional Partners:

rsbS

0.997

rsbRA

0.992

rsbT_2

0.943

AQS00084.1

0.883

rsbV

0.850

barA_2

0.844

barA_1

0.841

sigF_1

0.788

spoIIAA

0.751

todS_6

0.732

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS00084.1	barA_1	CSACC_19000	CSACC_21950	Putative histidine kinase sensor domain protein.	Signal transduction histidine-protein kinase BarA.	0.985
AQS00084.1	barA_2	CSACC_19000	CSACC_22060	Putative histidine kinase sensor domain protein.	Signal transduction histidine-protein kinase BarA.	0.969
AQS00084.1	rsbRA	CSACC_19000	CSACC_20440	Putative histidine kinase sensor domain protein.	RsbT co-antagonist protein RsbRA.	0.890
AQS00084.1	rsbS	CSACC_19000	CSACC_20450	Putative histidine kinase sensor domain protein.	RsbT antagonist protein RsbS.	0.890
AQS00084.1	rsbT_1	CSACC_19000	CSACC_20460	Putative histidine kinase sensor domain protein.	Serine/threonine-protein kinase RsbT.	0.883
AQS00084.1	rsbT_2	CSACC_19000	CSACC_20470	Putative histidine kinase sensor domain protein.	Serine/threonine-protein kinase RsbT.	0.995
AQS00084.1	rsbV	CSACC_19000	CSACC_20780	Putative histidine kinase sensor domain protein.	anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.890
AQS00084.1	todS_6	CSACC_19000	CSACC_37270	Putative histidine kinase sensor domain protein.	Sensor histidine kinase TodS.	0.967
barA_1	AQS00084.1	CSACC_21950	CSACC_19000	Signal transduction histidine-protein kinase BarA.	Putative histidine kinase sensor domain protein.	0.985
barA_1	barA_2	CSACC_21950	CSACC_22060	Signal transduction histidine-protein kinase BarA.	Signal transduction histidine-protein kinase BarA.	0.988
barA_1	rsbRA	CSACC_21950	CSACC_20440	Signal transduction histidine-protein kinase BarA.	RsbT co-antagonist protein RsbRA.	0.867
barA_1	rsbS	CSACC_21950	CSACC_20450	Signal transduction histidine-protein kinase BarA.	RsbT antagonist protein RsbS.	0.857
barA_1	rsbT_1	CSACC_21950	CSACC_20460	Signal transduction histidine-protein kinase BarA.	Serine/threonine-protein kinase RsbT.	0.841
barA_1	rsbT_2	CSACC_21950	CSACC_20470	Signal transduction histidine-protein kinase BarA.	Serine/threonine-protein kinase RsbT.	0.960
barA_1	rsbV	CSACC_21950	CSACC_20780	Signal transduction histidine-protein kinase BarA.	anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.	0.784
barA_1	todS_6	CSACC_21950	CSACC_37270	Signal transduction histidine-protein kinase BarA.	Sensor histidine kinase TodS.	0.974
barA_2	AQS00084.1	CSACC_22060	CSACC_19000	Signal transduction histidine-protein kinase BarA.	Putative histidine kinase sensor domain protein.	0.969
barA_2	barA_1	CSACC_22060	CSACC_21950	Signal transduction histidine-protein kinase BarA.	Signal transduction histidine-protein kinase BarA.	0.988
barA_2	rsbRA	CSACC_22060	CSACC_20440	Signal transduction histidine-protein kinase BarA.	RsbT co-antagonist protein RsbRA.	0.883
barA_2	rsbS	CSACC_22060	CSACC_20450	Signal transduction histidine-protein kinase BarA.	RsbT antagonist protein RsbS.	0.883