STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_9Alkaline phosphatase synthesis sensor protein PhoR. (263 aa)    
Predicted Functional Partners:
regX3_3
Sensory transduction protein regX3.
 
   0.893
cph1
Phytochrome-like protein cph1.
 
 
 
 0.890
regX3_2
Sensory transduction protein regX3.
 
   0.860
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.860
regX3_1
Sensory transduction protein regX3.
 
   0.857
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
0.852
CheY1
Chemotaxis protein CheY homolog.
  
   0.849
srrA_2
Transcriptional regulatory protein SrrA.
  
   0.843
sphR
Alkaline phosphatase synthesis transcriptional regulatory protein SphR.
  
   0.843
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
  
   0.841
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.