Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
icaApoly-beta-1,6-N-acetyl-D-glucosamine synthase. (417 aa)    
Predicted Functional Partners:
bcsB
Cyclic di-GMP-binding protein precursor.
 
 
 0.985
AQS00284.1
Response regulator PleD.
 
  
 0.963
AQS00285.1
Hypothetical protein.
 
  
 0.954
AQS00283.1
Hypothetical protein.
 
  
 0.893
AQS02486.1
Hypothetical protein.
 
  
 0.775
barA_2
Signal transduction histidine-protein kinase BarA.
  
  
 0.717
barA_1
Signal transduction histidine-protein kinase BarA.
  
  
 0.646
AQS00084.1
Putative histidine kinase sensor domain protein.
  
  
 0.641
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.637
sunS_2
SPBc2 prophage-derived glycosyltransferase SunS.
 
 
 0.624
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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