Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csoR_1Copper-sensing transcriptional repressor CsoR. (91 aa)    
Predicted Functional Partners:
pacS
Putative copper-transporting ATPase PacS.
 
  
 0.937
csoR_2
Copper-sensing transcriptional repressor CsoR.
  
     0.764
cdr_1
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
     
 0.662
XynC2
Enterobactin/ferric enterobactin esterase.
  
  
 0.649
copA_2
Copper-exporting P-type ATPase A.
 
  
 0.586
copZ
Copper chaperone CopZ.
  
  
 0.550
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
  
  
 0.475
copA_3
Copper-exporting P-type ATPase A.
  
  
 0.475
copA_4
Copper-exporting P-type ATPase A.
  
  
 0.475
fliN
Flagellar motor switch protein FliN.
    
   0.470
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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