Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oppF_1Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (320 aa)    
Predicted Functional Partners:
gsiD
Glutathione transport system permease protein GsiD.
 0.999
appA
Oligopeptide-binding protein AppA precursor.
 
 0.998
nikB
Nickel transport system permease protein NikB.
 
 0.997
oppC
Oligopeptide transport system permease protein OppC.
 
 0.992
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD.
 
 
 
0.983
oppB
Oligopeptide transport system permease protein OppB.
 
 
 0.954
oppA
Oligopeptide-binding protein OppA precursor.
 
  
 0.855
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
 
 0.782
ywaD
Aminopeptidase YwaD precursor.
  
 
 0.714
ykoD_1
Putative HMP/thiamine import ATP-binding protein YkoD.
  
  
 0.563
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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