Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQS00341.1Hypothetical protein. (201 aa)    
Predicted Functional Partners:
ecfT_3
Energy-coupling factor transporter transmembrane protein EcfT.
 
   
 0.892
ecfA2_2
Energy-coupling factor transporter ATP-binding protein EcfA2.
 
     0.887
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
 
     0.886
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.547
alaS_1
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.543
htpG_1
Chaperone protein HtpG.
   
 0.543
htpG_2
Chaperone protein HtpG.
   
 0.543
htpG_3
Chaperone protein HtpG.
   
 0.543
alaS_2
alanine--tRNA ligase.
   
 0.543
AQS00331.1
Ankyrin repeat protein.
  
 0.541
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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