STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfT_3Energy-coupling factor transporter transmembrane protein EcfT. (258 aa)    
Predicted Functional Partners:
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
 
 0.996
ecfA2_2
Energy-coupling factor transporter ATP-binding protein EcfA2.
 
 0.996
ecfA1_1
Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.949
ecfA2_1
Energy-coupling factor transporter ATP-binding protein EcfA2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.949
bioY_3
Biotin transporter BioY.
 
 0.919
bioY_2
Biotin transporter BioY.
 
 0.914
bioY_1
Biotin transporter BioY.
  
 0.902
AQS00341.1
Hypothetical protein.
 
   
 0.892
ykoD_2
Putative HMP/thiamine import ATP-binding protein YkoD.
 
 
 0.853
ykoD_1
Putative HMP/thiamine import ATP-binding protein YkoD.
 
 
 0.769
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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