Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rhaS_4HTH-type transcriptional activator RhaS. (290 aa)    
Predicted Functional Partners:
adaA
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 
 0.784
rob_4
Right origin-binding protein.
 
 
 
 0.778
marA_1
Multiple antibiotic resistance protein MarA.
 
 
0.777
soxS_2
Regulatory protein SoxS.
 
 
0.772
cfaD
CFA/I fimbrial subunit D.
 
 
 
 0.744
puuR_2
HTH-type transcriptional regulator PuuR.
 
 
 0.664
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.628
mbtB_2
Phenyloxazoline synthase MbtB.
  
  
 0.602
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.592
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.576
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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