STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpEPenicillin-binding protein 4*. (337 aa)    
Predicted Functional Partners:
ampC
Beta-lactamase precursor.
     0.989
srfAA
Surfactin synthase subunit 1.
 
  
 0.665
tycC
Tyrocidine synthase 3.
 
  
 0.664
nfdA
N-substituted formamide deformylase precursor.
 
     0.626
ywaD
Aminopeptidase YwaD precursor.
 
   
 0.607
grsB_2
Gramicidin S synthase 2.
 
  
 0.546
badR
Transcriptional activatory protein BadR.
     
 0.531
bglB
Thermostable beta-glucosidase B.
 
  
 0.498
lgrD_2
Linear gramicidin synthase subunit D.
 
  
 0.491
mbtB_2
Phenyloxazoline synthase MbtB.
  
  
 0.485
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.