STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
badRTranscriptional activatory protein BadR. (182 aa)    
Predicted Functional Partners:
ampC
Beta-lactamase precursor.
     
 0.680
pbpE
Penicillin-binding protein 4*.
     
 0.531
AQS00213.1
Hypothetical protein.
  
     0.496
AQR99923.1
YmaF family protein.
  
     0.489
AQS00075.1
Hypothetical protein.
  
   
 0.486
AQR99737.1
YmaF family protein.
  
     0.483
AQR99782.1
YmaF family protein.
  
     0.478
AQS00465.1
YmaF family protein.
  
     0.468
AQS00621.1
Mor transcription activator family protein.
  
     0.453
AQS01626.1
Hypothetical protein.
  
     0.447
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.