STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00362.1Iron hydrogenase 1. (525 aa)    
Predicted Functional Partners:
hndD
NADP-reducing hydrogenase subunit HndC.
 
 
0.949
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.907
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.907
rsxB_3
Electron transport complex subunit RsxB.
   
 
 0.872
bioB_2
Biotin synthase.
 
  
 0.829
bioB_1
Biotin synthase.
 
  
 0.827
rsxB_1
Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 
 
 0.804
mnmE_1
tRNA modification GTPase MnmE.
 
   
 0.799
thiH_1
2-iminoacetate synthase.
 
   
 0.792
AQR98592.1
Iron hydrogenase 1.
 
 
 
0.763
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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