STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yocH_2Cell wall-binding protein YocH precursor. (140 aa)    
Predicted Functional Partners:
iap_2
Putative endopeptidase p60 precursor.
  
  
 0.672
lytB_3
Putative endo-beta-N-acetylglucosaminidase precursor.
  
  
 0.671
AQS00157.1
Hypothetical protein.
  
   0.602
AQS00481.1
Hypothetical protein.
  
  
 0.601
XkdP
LysM domain/BON superfamily protein.
  
  
 0.601
AQS01702.1
Bacterial SH3 domain protein.
  
  
 0.601
AQR99706.1
Hypothetical protein.
 
   
 0.530
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
 
   
 0.503
AQS01497.1
Hypothetical protein.
   
 
 0.498
toxA_3
Toxin A.
   
 
 0.498
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.