Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
manZ_3Mannose permease IID component. (273 aa)    
Predicted Functional Partners:
manY_3
Mannose permease IIC component.
 0.999
manX_1
PTS system mannose-specific EIIAB component.
 
 0.998
manY_2
Mannose permease IIC component.
 0.997
manY_1
Mannose permease IIC component.
 0.996
manX_4
PTS system mannose-specific EIIAB component.
 
 0.993
manX_2
PTS system mannose-specific EIIAB component.
 
 0.990
manX_5
PTS system mannose-specific EIIAB component.
 
 0.990
manX_3
PTS system mannose-specific EIIAB component.
 
 0.988
manX_6
PTS system mannose-specific EIIAB component.
 
 0.988
ptsH
Phosphocarrier protein HPr.
    
 0.916
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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