Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arsD | frdA | CSACC_16720 | CSACC_38720 | Arsenical resistance operon trans-acting repressor ArsD. | Fumarate reductase flavoprotein subunit. | 0.450 |
arsD | ldh | CSACC_16720 | CSACC_12530 | Arsenical resistance operon trans-acting repressor ArsD. | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.646 |
arsD | ldh1 | CSACC_16720 | CSACC_31510 | Arsenical resistance operon trans-acting repressor ArsD. | L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.646 |
arsD | ldhB | CSACC_16720 | CSACC_43420 | Arsenical resistance operon trans-acting repressor ArsD. | L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. | 0.646 |
arsD | nifJ_1 | CSACC_16720 | CSACC_22230 | Arsenical resistance operon trans-acting repressor ArsD. | Pyruvate-flavodoxin oxidoreductase. | 0.983 |
arsD | nifJ_2 | CSACC_16720 | CSACC_39670 | Arsenical resistance operon trans-acting repressor ArsD. | Pyruvate-flavodoxin oxidoreductase. | 0.983 |
arsD | urdA | CSACC_16720 | CSACC_08910 | Arsenical resistance operon trans-acting repressor ArsD. | Urocanate reductase precursor. | 0.428 |
frdA | arsD | CSACC_38720 | CSACC_16720 | Fumarate reductase flavoprotein subunit. | Arsenical resistance operon trans-acting repressor ArsD. | 0.450 |
frdA | ldh | CSACC_38720 | CSACC_12530 | Fumarate reductase flavoprotein subunit. | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.555 |
frdA | ldh1 | CSACC_38720 | CSACC_31510 | Fumarate reductase flavoprotein subunit. | L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.555 |
frdA | ldhB | CSACC_38720 | CSACC_43420 | Fumarate reductase flavoprotein subunit. | L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. | 0.555 |
frdA | nifJ_1 | CSACC_38720 | CSACC_22230 | Fumarate reductase flavoprotein subunit. | Pyruvate-flavodoxin oxidoreductase. | 0.988 |
frdA | nifJ_2 | CSACC_38720 | CSACC_39670 | Fumarate reductase flavoprotein subunit. | Pyruvate-flavodoxin oxidoreductase. | 0.988 |
ldh | arsD | CSACC_12530 | CSACC_16720 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | Arsenical resistance operon trans-acting repressor ArsD. | 0.646 |
ldh | frdA | CSACC_12530 | CSACC_38720 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | Fumarate reductase flavoprotein subunit. | 0.555 |
ldh | ldh1 | CSACC_12530 | CSACC_31510 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.911 |
ldh | ldhB | CSACC_12530 | CSACC_43420 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate. | 0.908 |
ldh | nifJ_1 | CSACC_12530 | CSACC_22230 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | Pyruvate-flavodoxin oxidoreductase. | 0.994 |
ldh | nifJ_2 | CSACC_12530 | CSACC_39670 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | Pyruvate-flavodoxin oxidoreductase. | 0.994 |
ldh | pyk_1 | CSACC_12530 | CSACC_06040 | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.975 |
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