Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AQS00404.1Hypothetical protein. (616 aa)    
Predicted Functional Partners:
flhF
Flagellar biosynthesis protein FlhF.
 
   
 0.611
fliN
Flagellar motor switch protein FliN.
 
     0.598
ycgR
Flagellar brake protein YcgR.
 
    0.594
fliM
Flagellar motor switch protein FliM.
 
     0.583
cheX_1
CheY-P phosphatase CheX.
  
     0.541
AQR98559.1
Putative RNA polymerase sigma factor SigI.
 
     0.533
ftsA_2
Cell division protein FtsA.
 
     0.528
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.505
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
       0.503
flgL
Flagellar hook-associated protein 3.
 
    0.497
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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