STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00412.1Lineage-specific thermal regulator protein. (152 aa)    
Predicted Functional Partners:
AQS00411.1
DegV domain-containing protein.
  
    0.847
AQR98334.1
Hypothetical protein.
  
     0.649
bepA
Beta-barrel assembly-enhancing protease.
  
     0.642
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
  
  
 0.637
cotI_4
Spore coat protein I.
  
    0.619
YabQ
Spore cortex protein YabQ.
  
     0.603
MreD
Rod shape-determining protein MreD.
  
     0.582
AQS02168.1
Helix-turn-helix domain protein.
  
  
 0.582
spoIIIAH
Stage III sporulation protein AH.
  
     0.557
AQS02241.1
Hypothetical protein.
  
     0.553
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.