STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00421.1Hypothetical protein. (883 aa)    
Predicted Functional Partners:
AQS00422.1
Hypothetical protein.
       0.705
ywaD
Aminopeptidase YwaD precursor.
  
  
 0.491
nikB
Nickel transport system permease protein NikB.
  
  
 0.469
oppB
Oligopeptide transport system permease protein OppB.
  
  
 0.469
gsiD
Glutathione transport system permease protein GsiD.
  
  
 0.429
oppC
Oligopeptide transport system permease protein OppC.
  
  
 0.429
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD.
  
  
 0.425
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
  
 0.425
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
  
  
 0.425
ykoD_1
Putative HMP/thiamine import ATP-binding protein YkoD.
  
  
 0.404
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.