STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaKCys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (159 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
    
   0.784
AQS02074.1
Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.597
fliE
Flagellar hook-basal body complex protein FliE.
    
   0.597
cheC
CheY-P phosphatase CheC.
    
   0.587
flgG_1
Flagellar basal-body rod protein FlgG.
    
   0.578
flgG_2
Flagellar basal-body rod protein FlgG.
    
   0.578
cheR_1
Chemotaxis protein methyltransferase.
    
   0.573
cheR_2
Chemotaxis protein methyltransferase.
    
   0.573
cheR2_1
Chemotaxis protein methyltransferase cher2.
    
   0.573
cheR2_2
Chemotaxis protein methyltransferase cher2.
    
   0.573
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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