STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadK_2short-chain-fatty-acid--CoA ligase. (169 aa)    
Predicted Functional Partners:
fadK_1
short-chain-fatty-acid--CoA ligase.
     0.984
grsB_2
Gramicidin S synthase 2.
 
 
 0.919
srfAA
Surfactin synthase subunit 1.
 
 
 0.860
tycC
Tyrocidine synthase 3.
 
 
 0.859
mbtB_2
Phenyloxazoline synthase MbtB.
 
 
 0.786
mmgC_2
acyl-CoA dehydrogenase.
 
  
 0.785
fldA_2
E-cinnamoyl-CoA:R-phenyllactate CoA transferase; Belongs to the CoA-transferase III family.
 
  
 0.775
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.759
mmgC_3
acyl-CoA dehydrogenase.
 
  
 0.757
lgrD_2
Linear gramicidin synthase subunit D.
 
 
 0.711
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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