STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00477.1Hypothetical protein. (148 aa)    
Predicted Functional Partners:
AQS00478.1
Hypothetical protein.
  
 
 0.921
AQS00481.1
Hypothetical protein.
  
 
 0.907
AQS00486.1
Phage tail sheath protein.
  
 
 0.826
yafL
Putative endopeptidase YafL precursor.
  
    0.797
AQS00479.1
Hypothetical protein.
       0.773
AQS00482.1
Hypothetical protein.
       0.737
AQS00483.1
Hypothetical protein.
       0.725
AQS00484.1
Phage XkdN-like protein.
       0.725
XkdS
Hypothetical protein.
  
 
 0.709
AQS01155.1
Phage tail sheath protein.
  
 
 0.688
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.