STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yafLPutative endopeptidase YafL precursor. (679 aa)    
Predicted Functional Partners:
AQS00478.1
Hypothetical protein.
  
    0.840
AQS00481.1
Hypothetical protein.
  
  
 0.795
AQS00477.1
Hypothetical protein.
  
    0.788
AQS00482.1
Hypothetical protein.
  
    0.770
AQS00483.1
Hypothetical protein.
       0.751
AQS00484.1
Phage XkdN-like protein.
       0.751
AQS00479.1
Hypothetical protein.
       0.746
XtmA
Terminase small subunit.
  
  
 0.741
AQS00486.1
Phage tail sheath protein.
 
    0.715
iap_2
Putative endopeptidase p60 precursor.
 
   
0.559
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.