Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgl_16-phosphogluconolactonase. (362 aa)    
Predicted Functional Partners:
tycC
Tyrocidine synthase 3.
  
    0.806
srfAA
Surfactin synthase subunit 1.
  
    0.806
mbtB_1
Phenyloxazoline synthase MbtB.
  
    0.595
AQS02317.1
Hypothetical protein.
  
     0.595
fruA_2
Fructan beta-fructosidase precursor.
 
    0.536
mbtB_2
Phenyloxazoline synthase MbtB.
  
    0.528
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
   0.512
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
   0.512
albA
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
 
  
 0.464
AQS00511.1
Hypothetical protein.
       0.409
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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