STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YhiDPutative Mg(2+) transport ATPase. (235 aa)    
Predicted Functional Partners:
AQS00546.1
Hypothetical protein.
  
  
 0.741
flhB_1
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
   
   0.603
AQR98573.1
Calcium-transporting ATPase.
  
 
 0.557
AQR99258.1
Calcium-transporting ATPase 1.
  
 
 0.557
AQS00082.1
Hypothetical protein.
  
 
 0.557
yloB_1
Calcium-transporting ATPase.
  
 
 0.557
yloB_2
Calcium-transporting ATPase.
  
 
 0.557
CtpE
Calcium-transporting ATPase 1.
  
 
 0.557
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.523
atpB
ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
    
 
 0.499
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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