STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00549.1Hypothetical protein. (342 aa)    
Predicted Functional Partners:
AQS00482.1
Hypothetical protein.
  
     0.615
AQS01713.1
Phage minor structural protein GP20.
 
     0.536
AQS00546.1
Hypothetical protein.
 
     0.528
AQS00547.1
Hypothetical protein.
 
     0.527
AQS00548.1
Hypothetical protein.
 
     0.510
lspA
Lipoprotein signal peptidase.
  
     0.464
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
     0.462
lexA_3
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
     
 0.456
toxA_4
Toxin A.
  
     0.455
AQS01581.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.