Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sspHSmall, acid-soluble spore protein H. (59 aa)    
Predicted Functional Partners:
cotF_1
Spore coat protein F precursor.
  
   
 0.757
cotF_2
Spore coat protein F precursor.
 
   
 0.750
AQS01069.1
Hypothetical protein.
 
     0.733
AQS01066.1
Hypothetical protein.
  
     0.713
AQS01468.1
Hypothetical protein.
  
     0.690
AQS00570.1
Hypothetical protein.
       0.539
AQS00568.1
Hypothetical protein.
       0.459
AQS01439.1
Coat F domain protein.
  
   
 0.441
acoR_2
Acetoin dehydrogenase operon transcriptional activator AcoR.
  
    0.407
YqjA
Hypothetical protein.
  
     0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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