Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cas2CRISPR-associated endoribonuclease Cas2. (96 aa)    
Predicted Functional Partners:
Cas4
Hypothetical protein.
 
 
 
 0.995
cas1
CRISPR-associated endonuclease Cas1.
 
 
 0.992
cas3
CRISPR-associated nuclease/helicase Cas3.
 
  
 0.941
Cas6
CRISPR associated protein Cas6.
 
   
 0.923
Cas5
Hypothetical protein.
 
   
 0.904
AQS00674.1
Hypothetical protein.
 
   
 0.872
Csh
Hypothetical protein.
 
     0.857
AQS00173.1
CRISPR associated protein Cas6.
 
   
 0.843
AQS00177.1
Helicase Cas3.
 
  
 0.836
uvrD1
ATP-dependent DNA helicase UvrD1.
   
 
 0.828
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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