STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated endonuclease Cas1. (332 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated endoribonuclease Cas2.
 
 
 0.999
Cas4
Hypothetical protein.
 
 
 
 0.988
cas3
CRISPR-associated nuclease/helicase Cas3.
 
  
 0.910
Cas5
Hypothetical protein.
 
   
 0.878
Cas6
CRISPR associated protein Cas6.
 
   
 0.877
AQS00674.1
Hypothetical protein.
 
   
 0.874
Csh
Hypothetical protein.
 
     0.864
AQS00177.1
Helicase Cas3.
 
  
 0.842
AQS00173.1
CRISPR associated protein Cas6.
 
   
 0.821
AQS00176.1
Hypothetical protein.
 
   
 0.821
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.