Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ThiS | moeB | CSACC_25140 | CSACC_25130 | Sulfur carrier protein ThiS. | Molybdopterin-synthase adenylyltransferase. | 0.999 |
ThiS | tenI | CSACC_25140 | CSACC_25100 | Sulfur carrier protein ThiS. | Regulatory protein TenI. | 0.945 |
ThiS | thiC | CSACC_25140 | CSACC_07310 | Sulfur carrier protein ThiS. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.871 |
ThiS | thiE | CSACC_25140 | CSACC_07330 | Sulfur carrier protein ThiS. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.785 |
ThiS | thiG | CSACC_25140 | CSACC_25120 | Sulfur carrier protein ThiS. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.996 |
ThiS | thiH_1 | CSACC_25140 | CSACC_07590 | Sulfur carrier protein ThiS. | 2-iminoacetate synthase. | 0.711 |
ThiS | thiH_2 | CSACC_25140 | CSACC_25110 | Sulfur carrier protein ThiS. | 2-iminoacetate synthase. | 0.946 |
barA_2 | flgB | CSACC_22060 | CSACC_39160 | Signal transduction histidine-protein kinase BarA. | Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.709 |
barA_2 | rsbT_2 | CSACC_22060 | CSACC_20470 | Signal transduction histidine-protein kinase BarA. | Serine/threonine-protein kinase RsbT. | 0.994 |
barA_2 | thiH_1 | CSACC_22060 | CSACC_07590 | Signal transduction histidine-protein kinase BarA. | 2-iminoacetate synthase. | 0.748 |
barA_2 | thiH_2 | CSACC_22060 | CSACC_25110 | Signal transduction histidine-protein kinase BarA. | 2-iminoacetate synthase. | 0.748 |
flgB | barA_2 | CSACC_39160 | CSACC_22060 | Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | Signal transduction histidine-protein kinase BarA. | 0.709 |
flgB | rsbT_2 | CSACC_39160 | CSACC_20470 | Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | Serine/threonine-protein kinase RsbT. | 0.969 |
flgB | thiH_1 | CSACC_39160 | CSACC_07590 | Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 2-iminoacetate synthase. | 0.740 |
flgB | thiH_2 | CSACC_39160 | CSACC_25110 | Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 2-iminoacetate synthase. | 0.740 |
moeB | ThiS | CSACC_25130 | CSACC_25140 | Molybdopterin-synthase adenylyltransferase. | Sulfur carrier protein ThiS. | 0.999 |
moeB | tenI | CSACC_25130 | CSACC_25100 | Molybdopterin-synthase adenylyltransferase. | Regulatory protein TenI. | 0.911 |
moeB | thiC | CSACC_25130 | CSACC_07310 | Molybdopterin-synthase adenylyltransferase. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.847 |
moeB | thiE | CSACC_25130 | CSACC_07330 | Molybdopterin-synthase adenylyltransferase. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.835 |
moeB | thiG | CSACC_25130 | CSACC_25120 | Molybdopterin-synthase adenylyltransferase. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.989 |
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