STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbD_2Putative manganese catalase. (223 aa)    
Predicted Functional Partners:
CotJB
CotJB protein.
 
  
 0.792
AQS00693.1
Coat F domain protein.
 
  
 0.694
AQR98915.1
Hypothetical protein.
 
   
 0.615
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.600
YdfS3
Hypothetical protein.
 
   
 0.500
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.483
YdfS1
Hypothetical protein.
 
   
 0.471
cooS2
Carbon monoxide dehydrogenase 2.
  
   
 0.458
cooS1
Carbon monoxide dehydrogenase 1.
  
   
 0.430
fdhA
Glutathione-independent formaldehyde dehydrogenase.
 
    0.429
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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