STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpdA_13',5'-cyclic adenosine monophosphate phosphodiesterase CpdA. (302 aa)    
Predicted Functional Partners:
AQS00331.1
Ankyrin repeat protein.
   
 
 0.626
AQS02085.1
Hypothetical protein.
   
 
 0.626
AQS01414.1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
  
     0.544
malT_1
HTH-type transcriptional regulator MalT.
       0.527
barA_1
Signal transduction histidine-protein kinase BarA.
 
  
 0.487
barA_2
Signal transduction histidine-protein kinase BarA.
 
   
 0.483
arcB
Aerobic respiration control sensor protein ArcB.
 
  
 0.454
todS_6
Sensor histidine kinase TodS.
  
  
 0.423
yycG_6
Sensor histidine kinase YycG.
  
   
 0.402
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.