STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pipB2_2Secreted effector protein pipB2. (212 aa)    
Predicted Functional Partners:
AQS00578.1
Hypothetical protein.
  
     0.744
AQR98739.1
CAAX amino terminal protease self- immunity.
  
     0.592
AQS01883.1
Hypothetical protein.
  
     0.561
AQR99705.1
Bacterial SH3 domain protein.
 
     0.527
todS_6
Sensor histidine kinase TodS.
 
 
 0.524
AQS00312.1
Hypothetical protein.
  
     0.513
AQS00974.1
Bacterial dynamin-like protein.
 
 
 0.511
AQR99071.1
Hypothetical protein.
  
     0.483
yjjK_1
Putative ABC transporter ATP-binding protein YjjK.
 
   
 0.459
AQS00977.1
Bacterial dynamin-like protein.
  
  
 0.446
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.