STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiA_2Swarming motility protein YbiA. (180 aa)    
Predicted Functional Partners:
AQR99034.1
RNA ligase.
  
     0.698
AQS00167.1
Hypothetical protein.
  
     0.680
celS
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.664
AQR99035.1
HD domain protein.
 
     0.599
pelL
Pectate lyase L precursor.
  
     0.517
AQR99691.1
Hypothetical protein; Rhamnogalacturonase B, N-terminal.
  
     0.513
AQR99032.1
Hypothetical protein.
  
     0.507
AQS00781.1
Hypothetical protein.
  
   0.497
abfB
Extracellular exo-alpha-L-arabinofuranosidase precursor.
  
     0.495
ymdB
O-acetyl-ADP-ribose deacetylase.
     0.475
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.