STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00791.1Late competence development protein ComFB. (92 aa)    
Predicted Functional Partners:
AQR98731.1
DNA utilization protein GntX.
  
  
 0.848
cca_1
CCA-adding enzyme.
       0.592
gloA_2
Lactoylglutathione lyase.
       0.538
AQR98730.1
Hypothetical protein.
  
  
 0.516
pilE
Fimbrial protein precursor.
  
    0.467
epsF
Type II secretion system protein F.
  
  
 0.438
gspF
Putative type II secretion system protein F.
  
  
 0.438
epsE
Type II secretion system protein E.
  
    0.417
gspE
Putative type II secretion system protein E.
  
    0.417
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.