STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_3D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family. (280 aa)    
Predicted Functional Partners:
dacF
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
  
 
0.925
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
  
  
 
0.923
pbpF_2
Penicillin-binding protein 1F.
  
 
 0.911
pbpF_1
Penicillin-binding protein 1F.
     
 0.910
ytfJ
Putative spore protein YtfJ.
 
    0.756
AQS00805.1
Hypothetical protein.
  
    0.708
spoVD_2
Stage V sporulation protein D.
 
  
 0.575
spmA
Spore maturation protein A.
  
  
 0.491
spmB
Spore maturation protein B.
  
  
 0.487
AQR99453.1
Hypothetical protein.
   
    0.478
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.