STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narBNitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (695 aa)    
Predicted Functional Partners:
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon.
  
 0.989
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta.
 
  
 0.971
AQR98291.1
Iron hydrogenase 1.
  
 
 0.954
narT
Putative nitrate transporter NarT.
 
 
 0.954
sir_2
Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.934
sir_1
Sulfite reductase.
 
  
 0.922
mobA
Putative molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.
 
   
 0.908
AQR98785.1
Nitronate monooxygenase.
     
  0.900
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.898
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.898
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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