xerD_3 protein (Clostridium saccharobutylicum)

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Score

xerD_3

Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (292 aa)

Predicted Functional Partners:

spoIIM

0.776

dnaE

0.594

rpsJ

0.551

rpmI

0.541

spoIIIE

0.534

topB_2

0.497

rpsI

0.493

rpmG2

0.489

ctc_2

0.485

ctc_1

0.482

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ctc_1	ctc_2	CSACC_12220	CSACC_12230	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.938
ctc_1	rpmG2	CSACC_12220	CSACC_01870	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	0.931
ctc_1	rpmI	CSACC_12220	CSACC_27380	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.938
ctc_1	rpsI	CSACC_12220	CSACC_02370	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.955
ctc_1	rpsJ	CSACC_12220	CSACC_02000	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.947
ctc_1	xerD_3	CSACC_12220	CSACC_26560	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.482
ctc_2	ctc_1	CSACC_12230	CSACC_12220	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.938
ctc_2	rpmG2	CSACC_12230	CSACC_01870	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	0.931
ctc_2	rpmI	CSACC_12230	CSACC_27380	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.938
ctc_2	rpsI	CSACC_12230	CSACC_02370	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.955
ctc_2	rpsJ	CSACC_12230	CSACC_02000	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.953
ctc_2	xerD_3	CSACC_12230	CSACC_26560	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.485
dnaE	spoIIIE	CSACC_42640	CSACC_14470	DNA polymerase III subunit alpha.	DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.	0.565
dnaE	topB_2	CSACC_42640	CSACC_25960	DNA polymerase III subunit alpha.	DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.547
dnaE	xerD_3	CSACC_42640	CSACC_26560	DNA polymerase III subunit alpha.	Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.	0.594
rpmG2	ctc_1	CSACC_01870	CSACC_12220	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.931
rpmG2	ctc_2	CSACC_01870	CSACC_12230	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	General stress protein CTC; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.931
rpmG2	rpmI	CSACC_01870	CSACC_27380	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.972
rpmG2	rpsI	CSACC_01870	CSACC_02370	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.986
rpmG2	rpsJ	CSACC_01870	CSACC_02000	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.988