STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIMStage II sporulation protein M. (210 aa)    
Predicted Functional Partners:
AQS00870.1
Stage III sporulation protein SpoAB.
  
  
 0.901
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.858
AQS00868.1
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.855
spoIIE
Stage II sporulation protein E.
  
   
 0.823
YqfC
YabP family protein.
  
   
 0.821
SpoIIP
Stage II sporulation protein SpoIIP.
  
   
 0.808
SpoIIGA
Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.805
AQS00865.1
Hypothetical protein.
  
   
 0.798
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.776
AQS00866.1
Stage III sporulation protein SpoIIIAF.
  
   
 0.769
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.