STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00866.1Stage III sporulation protein SpoIIIAF. (201 aa)    
Predicted Functional Partners:
AQS00868.1
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.997
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.989
AQS00865.1
Hypothetical protein.
 
  
 0.978
AQS00869.1
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.971
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.965
AQS00870.1
Stage III sporulation protein SpoAB.
 
  
 0.944
SpoIIIAA
Hypothetical protein; Transcription termination factor Rho.
  
  
 0.839
spoIIM
Stage II sporulation protein M.
  
   
 0.777
AQR98334.1
Hypothetical protein.
  
     0.742
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
    0.729
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.