STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00870.1Stage III sporulation protein SpoAB. (172 aa)    
Predicted Functional Partners:
SpoIIIAA
Hypothetical protein; Transcription termination factor Rho.
 
  
 0.998
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.977
AQS00865.1
Hypothetical protein.
 
  
 0.975
AQS00868.1
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.973
AQS00869.1
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.958
AQS00866.1
Stage III sporulation protein SpoIIIAF.
 
  
 0.944
spoIIM
Stage II sporulation protein M.
  
  
 0.914
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.871
YqfC
YabP family protein.
  
  
 0.830
lacA_3
Galactose-6-phosphate isomerase subunit LacA.
   
    0.828
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.