STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbH_2Putative HTH-type transcriptional regulator YbbH. (278 aa)    
Predicted Functional Partners:
ptsG_1
PTS system glucose-specific EIICBA component.
  
  
 0.472
bglF
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.472
sacX
Negative regulator of SacY activity.
  
  
 0.472
ybbH_3
Putative HTH-type transcriptional regulator YbbH.
  
     0.470
ybbH_4
Putative HTH-type transcriptional regulator YbbH.
  
     0.456
rlmL
Ribosomal RNA large subunit methyltransferase L; Belongs to the methyltransferase superfamily.
       0.425
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
    0.419
yvoA
HTH-type transcriptional repressor YvoA.
  
   
 0.400
AQR99962.1
DnaJ domain protein.
  
     0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.