STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00917.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
hemN_2
Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR.
     0.867
YtxC
YtxC-like family protein.
 
     0.742
alkA
DNA-3-methyladenine glycosylase.
  
     0.686
AQS00931.1
Hypothetical protein.
  
     0.646
AQS01221.1
Hypothetical protein.
  
     0.594
AQR99962.1
DnaJ domain protein.
  
     0.588
AQS02630.1
MazG-like family protein.
  
     0.581
rpiR
HTH-type transcriptional regulator RpiR.
  
     0.580
AQS01977.1
Putative amidase domain protein.
  
     0.566
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.559
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.