STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00956.1Tetratricopeptide repeat protein. (116 aa)    
Predicted Functional Partners:
bepA
Beta-barrel assembly-enhancing protease.
 
 
 0.800
III1
DNA polymerase III subunit epsilon.
 
     0.770
AQR99416.1
Tetratricopeptide repeat protein.
 
 
 0.763
AQS02168.1
Helix-turn-helix domain protein.
  
 
   0.755
AQR98485.1
Tetratricopeptide repeat protein.
  
     0.748
AQR98334.1
Hypothetical protein.
 
  
 0.733
AQR98559.1
Putative RNA polymerase sigma factor SigI.
 
     0.730
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
 
 
 
 0.725
AQR99419.1
Hypothetical protein.
  
     0.721
cotI_4
Spore coat protein I.
  
     0.696
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.