STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01015.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
AQS01014.1
Hypothetical protein.
 
     0.962
AQS01013.1
Hypothetical protein.
 
     0.900
asnO_2
Asparagine synthetase 3.
 
   
 0.869
AQS01016.1
Hypothetical protein.
 
     0.864
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
   0.773
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
   0.773
ywqD_1
Tyrosine-protein kinase YwqD.
   
   0.590
fruA_3
PTS system fructose-specific EIIABC component.
  
  
 0.587
nagB
Glucosamine-6-phosphate deaminase 1; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
  
  
 0.511
pknB
Serine/threonine-protein kinase PknB.
   
 
 0.504
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.