STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01030.1Putative acetyltransferase. (219 aa)    
Predicted Functional Partners:
cotSA
Spore coat protein SA.
 
  
 0.847
gumH
GDP-mannose:cellobiosyl-diphosphopolyprenol alpha-mannosyltransferase.
  
  
 0.784
AQS01028.1
Hypothetical protein.
  
    0.776
lacA_1
Galactoside O-acetyltransferase.
  
     0.773
AQS01032.1
Glycosyl transferases group 1.
 
  
 0.728
wecA_1
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
  
  
 0.588
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.566
AQS01027.1
Glycosyl transferase family 2.
     
 0.538
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.512
AQS01025.1
Polysaccharide biosynthesis protein.
  
  
 0.412
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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