STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotF_1Spore coat protein F precursor. (101 aa)    
Predicted Functional Partners:
AQS01066.1
Hypothetical protein.
 
  
 0.968
AQS01069.1
Hypothetical protein.
 
  
 0.929
fdhA
Glutathione-independent formaldehyde dehydrogenase.
 
    0.853
sspH
Small, acid-soluble spore protein H.
  
     0.734
AQS00693.1
Coat F domain protein.
  
  
 0.669
cotF_2
Spore coat protein F precursor.
 
    
0.647
AQS01468.1
Hypothetical protein.
  
     0.600
AQS01162.1
Hypothetical protein.
  
     0.584
AQR99020.1
Phage late control protein Gpd.
  
     0.528
AQS01342.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.