Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQS01076.1Hypothetical protein. (354 aa)    
Predicted Functional Partners:
AQS01074.1
Hypothetical protein.
 
     0.949
AQS01075.1
Hypothetical protein.
 
     0.948
AQS01072.1
Hypothetical protein.
       0.610
AQS01073.1
Hypothetical protein; RecF/RecN/SMC N terminal domain.
       0.610
AQS01810.1
Hypothetical protein.
  
     0.500
AQR99365.1
Hypothetical protein.
  
     0.483
AQS01077.1
Hypothetical protein.
       0.439
tnsC
Transposon Tn7 transposition protein TnsC.
       0.439
tnsB
Transposon Tn7 transposition protein TnsB.
       0.439
tnsA
Transposon Tn7 transposition protein TnsA.
       0.439
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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