Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tnsCTransposon Tn7 transposition protein TnsC. (543 aa)    
Predicted Functional Partners:
tnsA
Transposon Tn7 transposition protein TnsA.
 
 
 
 0.989
AQS01077.1
Hypothetical protein.
 
 
 
 0.988
tnsB
Transposon Tn7 transposition protein TnsB.
 
 
 0.984
AQR99166.1
Hypothetical protein.
  
 
 0.680
AQS01114.1
Hypothetical protein.
  
     0.588
aroK_2
Shikimate kinase.
       0.563
xerC_4
Tyrosine recombinase XerC.
 
     0.547
AQS00618.1
Nuclease-related domain protein.
  
     0.531
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.486
AQR98563.1
Putative transposase.
    
   0.459
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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