STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnsCTransposon Tn7 transposition protein TnsC. (543 aa)    
Predicted Functional Partners:
tnsB
Transposon Tn7 transposition protein TnsB.
 
 
 0.990
tnsA
Transposon Tn7 transposition protein TnsA.
 
 
 
 0.990
AQS01077.1
Hypothetical protein.
 
   
 0.965
AQR99166.1
Hypothetical protein.
  
 
 0.761
AQR98563.1
Putative transposase.
    
   0.604
AQR99121.1
Putative transposase.
    
   0.604
AQS00682.1
Putative transposase.
    
   0.604
AQS01114.1
Hypothetical protein.
  
     0.588
aroK_2
Shikimate kinase.
       0.563
xerC_4
Tyrosine recombinase XerC.
 
     0.547
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.