STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerC_4Tyrosine recombinase XerC. (189 aa)    
Predicted Functional Partners:
aroK_2
Shikimate kinase.
       0.636
AQS01077.1
Hypothetical protein.
 
     0.560
tnsC
Transposon Tn7 transposition protein TnsC.
 
     0.547
tnsA
Transposon Tn7 transposition protein TnsA.
 
     0.547
tnsB
Transposon Tn7 transposition protein TnsB.
 
     0.539
ilvC_2
Ketol-acid reductoisomerase.
  
    0.434
AQR98731.1
DNA utilization protein GntX.
   
    0.426
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.412
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.