Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQS01114.1Hypothetical protein. (261 aa)    
Predicted Functional Partners:
epsE
Type II secretion system protein E.
  
 
 0.780
gspE
Putative type II secretion system protein E.
  
 
 0.780
epsF
Type II secretion system protein F.
  
  
 0.757
gspF
Putative type II secretion system protein F.
  
  
 0.757
AQR98730.1
Hypothetical protein.
   
  
 0.727
tnsB
Transposon Tn7 transposition protein TnsB.
  
     0.601
recD2_2
ATP-dependent RecD-like DNA helicase.
  
  
 0.592
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
  
  
 0.589
tnsC
Transposon Tn7 transposition protein TnsC.
  
     0.588
tnsA
Transposon Tn7 transposition protein TnsA.
  
     0.586
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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